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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123356068_123358435_R

Intron Information:

Intron Rank:
148598
Intron Class:
major
Intron Phase:
Intron Coordinates:
123356068 - 123358435
Intron Length:
2368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
80
0.75
1
78.6
31
Major PPT
100
1.12
0.4
100
0
Minor 5ss
28.7
-2.4
3.4
38.4
46.6
Minor BPS
46
-0.3
1.8
57.6
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027391
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034009
123352527 - 123359277
6751
ENSAPLT00000026516
123355211 - 123359277
4067