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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123390844_123394097_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123390844 - 123394097
Intron Length:
3254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TATTATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
AKGKTSRKERENGINGTVTS
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.8
81.7
35.3
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035835
123390054 - 123403417
13364
ENSAPLT00000007094
123390770 - 123404097
13328