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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123394259_123394716_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123394259 - 123394716
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
STGNFNILAVRISVLASICM
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78
0.63
0.7
77.4
24.6
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035835
123390054 - 123403417
13364
ENSAPLT00000007094
123390770 - 123404097
13328