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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123395544_123395632_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123395544 - 123395632
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
LFHIAGAYLLNLTHLGLVLL
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035835
123390054 - 123403417
13364
ENSAPLT00000007094
123390770 - 123404097
13328