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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123395704_123398111_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123395704 - 123398111
Intron Length:
2408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTCTTGTTAATA
Flanking Amino Acid:
PELYFQKTKKEDIFRQIVYI
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76.1
0.59
0.9
73.2
36
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
61.5
0.36
2
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035835
123390054 - 123403417
13364
ENSAPLT00000007094
123390770 - 123404097
13328