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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123399787_123399987_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123399787 - 123399987
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTAAATAACA
Flanking Amino Acid:
HAIIQEYVLDKINRKMHFSK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.8
78.7
33.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
48.4
-0.1
2
65.5
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007094
123390770 - 123404097
13328
ENSAPLT00000035835
123390054 - 123403417
13364