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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123400743_123403294_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123400743 - 123403294
Intron Length:
2552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTACAGCACT
Flanking Amino Acid:
GPPWLGLMFEITAKAAVIFV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
47.6
-0.1
2.3
79.28
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035835
123390054 - 123403417
13364
ENSAPLT00000007094
123390770 - 123404097
13328