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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123403314_123403414_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
123403314 - 123403414
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GC-CT
5'SS Sequence:
ATG|GCGATCCGC
5'SS Class:
weak_major
3'SS Sequence:
CCATGATCTTCCT|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
ATGGCCATGATC
Flanking Amino Acid:
RRRSPAAGPPWLGLMFEITA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.3
50.5
42.8
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
22.8
-1.5
4.2
50.6
42.8
Minor 5ss
22.7
-3.1
3.8
30.1
37.8
Minor BPS
49.5
-0
1.7
60.46
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006799
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007094
123390770 - 123404097
13328