Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123413831_123418122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123413831 - 123418122

Intron Length:

4292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCAATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

TGTGTTTCAATT

Flanking Amino Acid:

LEMKPDLIYPGHGPVVRDAN

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

1.1

79.9

Major BPS

76.9

0.67

1.2

31.9

Major PPT

73.6

0.53

0.9

71.9

38.3

Minor 5ss

38.3

-1.3

2.8

50.9

45.4

Minor BPS

0.23

1.6

71.95

39.8

Associated Gene:

Gene:

LACTB2

Ensembl Gene ID:

ENSAPLG00000006753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007013

123411950 - 123423449

11500