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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123418302_123420509_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123418302 - 123420509
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TACACTTTCATT
Flanking Amino Acid:
DVVQTEGATLRVLHTPGHTD
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83
0.74
0.7
81.8
30.3
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
52.6
0.16
1.8
69.24
42.3

Associated Gene:

Gene:
LACTB2
Ensembl Gene ID:
ENSAPLG00000006753
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007013
123411950 - 123423449
11500