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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123433555_123442518_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123433555 - 123442518
Intron Length:
8964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CTCTTTTTAATA
Flanking Amino Acid:
VHFFHCGIFIRYWFALKYGC
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
78.8
0.65
0.8
76.6
30.6
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
68.4
0.57
1.2
69.67
37.9

Associated Gene:

Gene:
XKR9
Ensembl Gene ID:
ENSAPLG00000006731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006980
123432952 - 123444433
11482