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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123508322_123509527_R

Intron Information:

Intron Rank:
135820
Intron Class:
major
Intron Phase:
Intron Coordinates:
123508322 - 123509527
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTATTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTCTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
71.2
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.7
81.1
30.6
Minor 5ss
36.5
-1.5
3
46.2
42.5
Minor BPS
48.4
-0.1
2
68.19
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027639
123507337 - 123509691
2355