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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123604595_123604803_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123604595 - 123604803
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTACTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATGCCCTTATCT
Flanking Amino Acid:
IYNTYKNNVGGLLGPAKREA
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
87.7
28.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.5
0.51
0.9
66.1
34.8
Minor 5ss
22.7
-3.1
3.9
33.8
42.3
Minor BPS
66.8
0.6
1.6
80.11
41.5

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006583
123593835 - 123682579
88745
ENSAPLT00000037753
123593835 - 123742623
148789
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614