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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123605219_123628815_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123605219 - 123628815
Intron Length:
23597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTTTCTTTCACC
Flanking Amino Acid:
DTHLFFNDLEECDQVHIDDV
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
76.1
0.59
0.7
74.8
28.8
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
68.7
0.57
1.7
77.59
39

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745
ENSAPLT00000037753
123593835 - 123742623
148789