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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123648126_123648543_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123648126 - 123648543
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTGATAGACT
Flanking Amino Acid:
NSTGFNSSQQEYPSYPSFGQ
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
46.4
-0.2
2.4
71.95
45.2

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745
ENSAPLT00000037753
123593835 - 123742623
148789