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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123648627_123655166_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123648627 - 123655166
Intron Length:
6540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCACATAATT
Flanking Amino Acid:
GQAPYSYQMQGSSFTTSSGI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
79.7
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
40.8
-1
2.6
51.4
45.1
Minor BPS
57.2
0.31
1.8
78.44
37.1

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745
ENSAPLT00000037753
123593835 - 123742623
148789