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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123660110_123662036_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123660110 - 123662036
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTGGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTTTCTTTTCTC
Flanking Amino Acid:
DGSLDNFSGSAIGSSGFSPR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
72.7
0.51
1
67.8
37.6
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
42.2
-0.6
3.5
65.52
41.1

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745
ENSAPLT00000037753
123593835 - 123742623
148789