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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123662118_123672721_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123662118 - 123672721
Intron Length:
10604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
TATATTTCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATAT
Flanking Amino Acid:
LLSASTQTAAVKTEPMSSSE
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.8
73.6
36.6
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
59
0.36
1.9
82.22
38.9

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017282
123593835 - 123755448
161614