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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123662118_123674588_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123662118 - 123674588
Intron Length:
12471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TATATTTCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATAT
Flanking Amino Acid:
NNSMTPNGTEVKTEPMSSSE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.8
73.6
36.6
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
59
0.36
1.9
82.22
38.9

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745