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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123674717_123676150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123674717 - 123676150
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATGCCACTAAAA
Flanking Amino Acid:
GSDVAVSSSCRSMEMQDLAS
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.3
0.66
0.8
77.3
36.4
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
45.9
-0.3
2
59.22
39.4

Associated Gene:

Gene:
EYA1
Ensembl Gene ID:
ENSAPLG00000006292
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031239
123593835 - 123755448
161614
ENSAPLT00000017282
123593835 - 123755448
161614
ENSAPLT00000006583
123593835 - 123682579
88745