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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123761041_123762165_F

Intron Information:

Intron Rank:
134543
Intron Class:
major
Intron Phase:
Intron Coordinates:
123761041 - 123762165
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
TTAATTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.9
0.61
0.9
72.7
37.2
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022320
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031264
123760934 - 123763876
2943