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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12381469_12381895_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12381469 - 12381895
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTTCCCTTACA
Flanking Amino Acid:
AKPFKCSHCDRCFSRSDHLA
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
36.9
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
86.4
0.82
0.7
80.2
25.2
Minor 5ss
42.7
-0.8
3.2
57.8
47.2
Minor BPS
61.7
0.36
2
76.43
40.4

Associated Gene:

Gene:
KLF6
Ensembl Gene ID:
ENSAPLG00000029541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046052
12380890 - 12387199
6310