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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12382020_12383749_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12382020 - 12383749
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAACATATAATC
Flanking Amino Acid:
HLKAHQRTHTGEKPYRCSWE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
82.6
29.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.8
0.72
0.8
77
31.6
Minor 5ss
32.4
-2
2.5
37
40.2
Minor BPS
46.8
-0.2
1.7
56.24
35.3

Associated Gene:

Gene:
KLF6
Ensembl Gene ID:
ENSAPLG00000029541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046052
12380890 - 12387199
6310