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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12384324_12387097_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12384324 - 12387097
Intron Length:
2774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACGA
5'SS Class:
major
3'SS Sequence:
CTCTTTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTCTCTTTCACC
Flanking Amino Acid:
LPSLEEYWQQTCLELERYLQ
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
65
41
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
71.9
0.49
0.8
65.9
35
Minor 5ss
30.7
-2.2
3.1
39.6
45.7
Minor BPS
61.8
0.35
1.8
69.26
43

Associated Gene:

Gene:
KLF6
Ensembl Gene ID:
ENSAPLG00000029541
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046052
12380890 - 12387199
6310