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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1239462_1250442_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1239462 - 1250442
Intron Length:
10981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGGG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAC
U12 Branch Point Sequence:
AGGGCCTGACGG
Flanking Amino Acid:
LRALRQRALQNKSSGEPESK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
52.4
41.8
Major BPS
47.4
-0.1
1
50.7
32.1
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
26.6
-2.7
3.7
37.3
47.4
Minor BPS
39.9
-0.9
2
38.94
44.2

Associated Gene:

Gene:
CCDC12
Ensembl Gene ID:
ENSAPLG00000005482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005666
1231875 - 1250680
18806