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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123980813_123981345_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123980813 - 123981345
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATTTTGGTACTT
Flanking Amino Acid:
PNRPRYCGFMSVFQYCFGCE
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.7
0.69
0.9
81.2
36.5
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
42.5
-0.4
2.6
68.91
43

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860