Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123981457_123983283_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

123981457 - 123983283

Intron Length:

1827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

AAATAATGTTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

CTTACTCTAAAT

Flanking Amino Acid:

YAALKRIAMQVNLHTNLEKK

Intron Amino Acid Position:

981

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

81.3

32.8

Major BPS

71.2

0.53

70.3

31.9

Major PPT

56.7

0.15

1.1

52.5

45.9

Minor 5ss

30.6

-2.2

2.6

36.7

40.4

Minor BPS

0.2

1.8

74.71

41.8

Associated Gene:

Gene:

TRPA1

Ensembl Gene ID:

ENSAPLG00000006056

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006317

123978456 - 124017315

38860