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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123990163_123990610_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123990163 - 123990610
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACATTTTTACTT
Flanking Amino Acid:
PVCKEYLLMKWMAYGFRAHL
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.2
36.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.7
0.62
1
76
38
Minor 5ss
35
-1.7
3.5
45.3
45.2
Minor BPS
53.6
0.19
1.5
65.81
39.9

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860