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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123992195_123993495_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123992195 - 123993495
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTATTATTC
Flanking Amino Acid:
SEEKTSRDFYIEYNFRYLQC
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.2
0.68
0.9
77.9
40.2
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
53.5
0.09
1.8
67.82
37.9

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860