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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123993556_123993907_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123993556 - 123993907
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCTTCATTCACT
Flanking Amino Acid:
MVEYLPDSFKLVLDNCIIES
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.5
0.44
1
70.3
34
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
57.6
0.32
2.1
76.66
45.8

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860