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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_123997955_123998041_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123997955 - 123998041
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
DKKSPLHFAASYGRINTCQR
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
72.8
0.51
1
74.5
33.9
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860