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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124004558_124007092_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124004558 - 124007092
Intron Length:
2535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTACTCTAATT
Flanking Amino Acid:
VDGNKETLLHRTALFDHYEL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
35.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.6
0.87
0.6
84.4
23.7
Minor 5ss
29.3
-2.4
3.5
40.3
46.1
Minor BPS
60.4
0.4
1.7
78.3
37.9

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860