About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124011173_124012567_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124011173 - 124012567
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTTTTCTTAAAT
Flanking Amino Acid:
VQSLHNEIVKILVQHSSTDV
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
64.9
0.34
1
55.8
43.6
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
78.9
0.99
1.3
89.96
33.4

Associated Gene:

Gene:
TRPA1
Ensembl Gene ID:
ENSAPLG00000006056
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006317
123978456 - 124017315
38860