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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124103937_124114954_R

Intron Information:

Intron Rank:
154289
Intron Class:
major
Intron Phase:
Intron Coordinates:
124103937 - 124114954
Intron Length:
11018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
GGCTTGTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACATATCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
67.4
0.39
1.1
60.8
44.7
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
48.5
-0
1.8
64.77
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030506
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037692
124102934 - 124115473
12540