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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124121684_124130463_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
124121684 - 124130463
Intron Length:
8780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATATTCTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
51
0.11
1.6
68.58
36.2

Associated Gene:

Gene:
KCNB2
Ensembl Gene ID:
ENSAPLG00000021469
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035145
124121470 - 124306419
184950