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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124131149_124304259_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124131149 - 124304259
Intron Length:
173111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
EKPNSSVAAKILAIVSILFI
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
KCNB2
Ensembl Gene ID:
ENSAPLG00000021469
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035145
124121470 - 124306419
184950