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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124324875_124327933_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124324875 - 124327933
Intron Length:
3059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
ACTGACTTAACT
Flanking Amino Acid:
EFRRWRAVAQAVINGFSEIA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
66.8
0.6
1.6
79.27
42.7

Associated Gene:

Gene:
TERF1
Ensembl Gene ID:
ENSAPLG00000005993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019273
124324709 - 124345507
20799
ENSAPLT00000006213
124324709 - 124345507
20799