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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124329707_124330926_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124329707 - 124330926
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTT
5'SS Class:
major
3'SS Sequence:
ATATTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAAGT
Flanking Amino Acid:
EDIRRLIQIQVVAVYMEKRY
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
77.9
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.9
0.52
0.9
66.9
39.7
Minor 5ss
40.1
-1.1
3.2
58.3
46.3
Minor BPS
55.8
0.26
1.9
77.35
39.2

Associated Gene:

Gene:
TERF1
Ensembl Gene ID:
ENSAPLG00000005993
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006213
124324709 - 124345507
20799