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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124350086_124350616_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
124350086 - 124350616
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAC
U12 Branch Point Sequence:
TATGACTCAGCT
Flanking Amino Acid:
HQGQECGHEHVPAFITTSEY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
59.6
39.7
Major BPS
65.9
0.4
1.1
57.5
39.1
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
59.8
0.33
2.3
71.7
40.4
Minor BPS
47.9
-0
2
70.88
45.3

Associated Gene:

Gene:
SBSPON
Ensembl Gene ID:
ENSAPLG00000005883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006089
124348158 - 124357026
8869