Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124427386_124430167_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

124427386 - 124430167

Intron Length:

2782

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

ATGTATATATTT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

32.3

Major BPS

76.8

0.67

40.9

Major PPT

94.5

0.5

93.1

Minor 5ss

40.7

-1

3.1

54.8

43.3

Minor BPS

45.2

-0.2

1.9

63.95

40.8

Associated Gene:

Gene:

RPL7

Ensembl Gene ID:

ENSAPLG00000005601

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006390

124427318 - 124433424

6107