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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124430379_124431256_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124430379 - 124431256
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
TDNSLIRKCLGKLGIICMED
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.1
0.54
0.9
71.2
38.6
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
RPL7
Ensembl Gene ID:
ENSAPLG00000005601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015730
124430168 - 124434452
4285
ENSAPLT00000006390
124427318 - 124433424
6107
ENSAPLT00000005823
124430168 - 124449021
18854