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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124431841_124432469_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124431841 - 124432469
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTACTGATAACT
Flanking Amino Acid:
PKLAFVIRIRGINGVSPKVR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
69.5
0.44
0.9
61.8
40
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
46.3
-0.2
2.2
68
42.2

Associated Gene:

Gene:
RPL7
Ensembl Gene ID:
ENSAPLG00000005601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015730
124430168 - 124434452
4285
ENSAPLT00000006390
124427318 - 124433424
6107
ENSAPLT00000005823
124430168 - 124449021
18854