About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124432637_124433223_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124432637 - 124433223
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TGATTAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TATTATATAATC
Flanking Amino Acid:
RLKRVLAQKKFRKAQRKVIY
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
78.1
29.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
74.3
0.55
1
67.4
42.5
Minor 5ss
31.2
-2.2
3.3
42.9
44.7
Minor BPS
55.8
0.16
1.7
69.57
35.5

Associated Gene:

Gene:
RPL7
Ensembl Gene ID:
ENSAPLG00000005601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015730
124430168 - 124434452
4285
ENSAPLT00000006390
124427318 - 124433424
6107
ENSAPLT00000005823
124430168 - 124449021
18854