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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124436313_124455729_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124436313 - 124455729
Intron Length:
19417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACTATA
5'SS Class:
major
3'SS Sequence:
TTTTATTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
MMVNCHAHFWTTKAFLPKML
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
78
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.1
0.77
0.7
80.4
31.4
Minor 5ss
44.4
-0.6
2.6
51.6
45.1
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
RDH10
Ensembl Gene ID:
ENSAPLG00000005505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005699
124435482 - 124461487
26006