About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124455829_124457136_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124455829 - 124457136
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTAG
5'SS Class:
major
3'SS Sequence:
ATTGCCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTGCCTCAATC
Flanking Amino Acid:
LGLFSTAGVEDYCASKFGAV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.7
38.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.9
0.29
1
55.5
38.6
Minor 5ss
42
-0.9
2.5
49.5
46.8
Minor BPS
68.7
0.57
1.6
78.52
37.5

Associated Gene:

Gene:
RDH10
Ensembl Gene ID:
ENSAPLG00000005505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005699
124435482 - 124461487
26006