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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12449500_12450207_R

Intron Information:

Intron Rank:
135758
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12449500 - 12450207
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
ATATATTGACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATATATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
51.4
0.03
1.2
50.6
46.3
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
52.2
0.06
1.6
63.3
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020425
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022115
12431256 - 12450488
19233