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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124504090_124563665_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124504090 - 124563665
Intron Length:
59576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAC
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
GSSIEASHDQAALSALKQFS
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
67.1
32.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.8
0.83
0.7
86.1
27.7
Minor 5ss
43.7
-0.7
3
58.5
46.3
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044400
124503068 - 124655898
152831