About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124555317_124563665_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124555317 - 124563665
Intron Length:
8349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAC
5'SS Class:
major
3'SS Sequence:
TTTTCCCTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCATCAAGAAAT
Flanking Amino Acid:
GSSIEASHDQEQPEGRQQR*
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
67.1
32.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.6
0.69
0.9
77.6
31.1
Minor 5ss
43.7
-0.7
3
58.5
46.3
Minor BPS
45.3
-0.2
2
65.92
43.5

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005398
124555287 - 124651455
96169