About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124583156_124596629_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124583156 - 124596629
Intron Length:
13474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTGCTTTTACT
Flanking Amino Acid:
NVGFPEPTSNTPKGILHLSP
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
74.2
0.6
1
67
39.4
Major PPT
88
0.85
0.7
85.5
27.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
69.5
0.7
1.7
87.77
37.8

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005398
124555287 - 124651455
96169
ENSAPLT00000044400
124503068 - 124655898
152831
ENSAPLT00000025342
124503068 - 124651455
148388