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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124600441_124603639_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124600441 - 124603639
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATGATC
Flanking Amino Acid:
MPRRREFVMQVKVGNEITTG
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
67.8
38.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
57.8
0.26
2.4
75.1
40.8
Minor BPS
50.1
-0
1.6
66.34
33.2

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025342
124503068 - 124651455
148388
ENSAPLT00000005398
124555287 - 124651455
96169
ENSAPLT00000044400
124503068 - 124655898
152831